/******************************************************************************
	This file is a part of the Snapshot Bioinformatics Project

	Copyright (C) 2012-2013 Jarom Schow

	This program is free software: you can redistribute it and/or modify
	it under the terms of the GNU General Public License as published by
	the Free Software Foundation, either version 3 of the License, or
	(at your option) any later version.

	This program is distributed in the hope that it will be useful,
	but WITHOUT ANY WARRANTY; without even the implied warranty of
	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
	GNU General Public License for more details.

	You should have received a copy of the GNU General Public License
	along with this program.  If not, see <http://www.gnu.org/licenses/>.
******************************************************************************/

#include "Sequence.h"

#include <QtCore/QString>

#include "Alphabet.h"

using namespace Bio;

/**
**/
Sequence::Sequence() : m_alphabet( Unknown )
{
}

/**
**/
Sequence::Sequence( const QByteArray &seq ) : m_seq( seq )
{
}

/**
**/
Sequence::~Sequence()
{
}

/**
**/
int Sequence::getLength() const
{
	return m_seq.length();
}

/**
**/
QByteArray Sequence::getSequence() const
{
	return m_seq;
}

/**
**/
void Sequence::setSequence( const QByteArray &seq )
{
	m_seq = seq;
}

/**
**/
Sequence::Alphabet Sequence::getAlphabet() const
{
	return m_alphabet;
}

/**
**/
void Sequence::setAlphabet( Alphabet alphabet )
{
	m_alphabet = alphabet;
}

/**
**/
Sequence& Sequence::operator=( const Sequence &seq )
{
	m_alphabet = seq.m_alphabet;
	m_seq = seq.m_seq;

	return *this;
}
